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  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>microPublication Biology</journal-title>
      </journal-title-group>
      <issn pub-type="epub">2578-9430</issn>
      <publisher>
        <publisher-name>Caltech Library</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.17912/micropub.biology.001486</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>new finding</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>genome announcements</subject>
        </subj-group>
        <subj-group subj-group-type="species">
          <subject>bacteriophage</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>
          Genome Sequences of the 
          <italic>Arthrobacter globiformis</italic>
           Phage BillyTP (Cluster AY) and 
          <italic>Gordonia rubripertincta</italic>
           Phage MAnor (Cluster CT)
        </article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <name>
            <surname>Melton</surname>
            <given-names>James</given-names>
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            <given-names>Morgan</given-names>
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            <given-names>Destinee</given-names>
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            <given-names>Vashti</given-names>
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          <name>
            <surname>Ganguly</surname>
            <given-names>Shrijeeta</given-names>
          </name>
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        </contrib>
        <aff id="aff1">
          <label>1</label>
          Biology Department, Spelman College
        </aff>
      </contrib-group>
      <contrib-group>
        <contrib contrib-type="reviewer">
          <anonymous/>
        </contrib>
      </contrib-group>
      <author-notes>
        <corresp id="cor1">
          <label>§</label>
          Correspondence to: James Melton (
          <email>jmelton@spelman.edu</email>
          )
        </corresp>
        <fn fn-type="coi-statement">
          <p>The authors declare that there are no conflicts of interest present.</p>
        </fn>
      </author-notes>
      <pub-date date-type="pub" publication-format="electronic">
        <day>4</day>
        <month>3</month>
        <year>2025</year>
      </pub-date>
      <pub-date date-type="collection" publication-format="electronic">
        <year>2025</year>
      </pub-date>
      <volume>2025</volume>
      <elocation-id>10.17912/micropub.biology.001486</elocation-id>
      <history>
        <date date-type="received">
          <day>31</day>
          <month>12</month>
          <year>2024</year>
        </date>
        <date date-type="rev-recd">
          <day>23</day>
          <month>2</month>
          <year>2025</year>
        </date>
        <date date-type="accepted">
          <day>26</day>
          <month>2</month>
          <year>2025</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2025 by the authors</copyright-statement>
        <copyright-year>2025</copyright-year>
        <license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
          <license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <p>
          Phages BillyTP (Cluster AY) and MAnor (Cluster CT) were isolated from soil using 
          <italic>Arthrobacter globiformis</italic>
           B-2979 and 
          <italic>Gordonia rubripertincta</italic>
           NRRL B-16540, respectively, as hosts. The genome of BillyTP is 53,003 base pairs (bp) and contains 96 putative genes, while the genome of MAnor is 48,333 bp encoding 73 putative genes. BillyTP and MAnor are assigned to actinobacteriophage clusters AY and CT, respectively, based on gene content similarity (GCS) of at least 35%.
        </p>
      </abstract>
      <funding-group>
        <award-group>
          <funding-source>
            <institution-wrap>
              <institution>U.S. National Science Foundation (United States)</institution>
              <institution-id>https://ror.org/021nxhr62</institution-id>
            </institution-wrap>
          </funding-source>
          <award-id>'Developing Foundations for Nanopore DNA Sequencing Course-based Undergraduate Research Experiences at Minority-Serving Institutions' Award 2215496</award-id>
          <principal-award-recipient>James T. Melton III and Shrijeeta Ganguly</principal-award-recipient>
        </award-group>
        <award-group>
          <funding-source>
            <institution-wrap>
              <institution>U.S. National Science Foundation (United States)</institution>
              <institution-id>https://ror.org/021nxhr62</institution-id>
            </institution-wrap>
          </funding-source>
          <award-id>The SENIC Catalyst Grant through NSF Award #ECCS-2025462</award-id>
          <principal-award-recipient>James T. Melton III</principal-award-recipient>
        </award-group>
      </funding-group>
    </article-meta>
  </front>
  <body>
    <fig position="anchor" id="f1">
      <label>
        Figure 1. 
        <bold>Plaque and virion morphologies</bold>
      </label>
      <caption>
        <p>Plaque morphologies (A, B) and electron micrographs (C, D) of phages BillyTP (A, C) and MAnor (B, D). The plaques of BillyTP ranged from 0.5 to 1.5 mm (n=20; average=1 mm; SD=0.28 mm) in diameter, while the plaques of MAnor ranged from 1 to 2.5 mm (n=20; average=2 mm; SD=0.54 mm) in diameter. Virion imaging was performed on a JEOL 100CX II transmission electron microscope (TEM) 100kV and revealed that both phages displayed a typical siphovirus morphology. Scale bars in the plaque images and electron micrographs are 10 mm and 100 nm, respectively.</p>
        <p>&amp;nbsp;</p>
        <p>&amp;nbsp;</p>
      </caption>
      <graphic xlink:href="25789430-2025-micropub.biology.001486"/>
    </fig>
    <sec>
      <title>Description</title>
      <p>
        <italic>Arthrobacter</italic>
         and 
        <italic>Gordonia</italic>
         species (Actinobacteria) are Gram-positive bacteria that are common in soil, and a few species are known to cause rare infections in immunocompromised individuals 
        <xref ref-type="bibr" rid="R3">(Busse et al., 2015; Li et al., 2021; Ramanan et al., 2013)</xref>
        . With antimicrobial resistance (AMR) on the rise, phage discovery is imperative for potential uses to combat infections with phage therapy 
        <xref ref-type="bibr" rid="R8">(Hatfull et al., 2022; Strathdee et al., 2023)</xref>
        . To date, a total of 517 
        <italic>Arthrobacter</italic>
         phages and 799 
        <italic>Gordonia</italic>
         phages have been isolated and sequenced 
        <xref ref-type="bibr" rid="R15">(Russell and Hatfull, 2017)</xref>
        .
      </p>
      <p>
        Here, we isolated from soil, imaged, and sequenced phages BillyTP (GPS: 33.655316 N, 84.738776 W) and MAnor (GPS: 33.429512 N, 86.681819 W) using 
        <italic>Arthrobacter globiformis</italic>
         B-2979 and 
        <italic>Gordonia rubripertincta</italic>
         NRRL B-16540, respectively, as hosts (
        <xref ref-type="fig" rid="f1">Figure 1</xref>
        ). Phages were extracted from the soil (0.2 μm filter) after adding peptone-yeast extract-calcium (PYCa) liquid medium and vigorously shaking for one hour at 250 rpm. After adding host bacteria and shaking at 30 ˚C for 48 hours, the enriched cultures were refiltered (0.2 μm filter), and the filtrate was plated in top agar with host bacteria and incubated at 30°C for 2-4 days. Both phages were purified through three rounds of plating. BillyTP displayed plaques that ranged from 0.5 to 1.5 mm in diameter (n=20; average=1 mm; SD=0.28 mm), with plaques on the lower end of the size range appearing turbid while the larger plaques appearing clear (
        <xref ref-type="fig" rid="f1">Figure 1A</xref>
        ). MAnor had clear plaques that ranged from 1 to 2.5 mm in diameter (n=20; average=2 mm; SD=0.54 mm; 
        <xref ref-type="fig" rid="f1">Figure 1B</xref>
        ). Transmission electron microscopy (TEM) was performed using UranylLess EM stain and showed that both phages had a siphovirus morphology with long, non-contractile tails (
        <xref ref-type="fig" rid="f1">Figure 1C, D</xref>
        ).
      </p>
      <p>
        DNA was extracted from a high titer lysate (BillyTP: 3.3 x 10
        <sup>10</sup>
         PFU/mL; MAnor: 5 x 10
        <sup>10 </sup>
        PFU/mL) using the Promega Wizard DNA Clean-up kit, prepared for sequencing using the NEB Ultra II FS kit and sequenced on an Illumina platform with v3 reagents, resulting in 364,128 and 295,232 150-base single-end reads for BillyTP and MAnor, respectively. Genome assembly was performed using Newbler v2.9 
        <xref ref-type="bibr" rid="R10">(Miller et al., 2010)</xref>
        , and the genomic termini were identified using Consed v29 
        <xref ref-type="bibr" rid="R7">(Gordon and Green, 2013)</xref>
         following Russell (2018). The genome of BillyTP was 53,003 bp (906X coverage; 62.8 GC%) and exhibited a 3’ single-stranded overhang that was nine bases in length (5'-CGCCGGTGA-3'). The genome of MAnor was 48,333 bp (865X coverage; 60.7 GC%) and contained a 3’ single-stranded overhang that was 13 bases in length (5'-CGGCGGTAGGCTT-3').
      </p>
      <p>
        Genome annotations were performed using DNA Master v5.23.6 
        <xref ref-type="bibr" rid="R11">(Pope and Jacobs-Sera, 2018)</xref>
         and PECAAN v20240320 
        <xref ref-type="bibr" rid="R14">(Rinehart et al., 2016)</xref>
        . Open reading frames (ORFs) were determined using GeneMark v3.25 
        <xref ref-type="bibr" rid="R2">(Besemer and Borodovsky, 2005)</xref>
         and Glimmer v3.02 
        <xref ref-type="bibr" rid="R5">(Delcher et al., 2007)</xref>
        . Starterator v1.2 was used to compare the starting position in previously annotated genomes. Gene functions were assigned based on BLAST 
        <xref ref-type="bibr" rid="R1">(Altschul et al., 1990)</xref>
        , using the Actinobacteriophage and NCBI non-redundant database, HHPred 
        <xref ref-type="bibr" rid="R17">(Söding et al., 2005)</xref>
        , using the PDB_mmCIF70, Pfam-v.36, NCBI Conserved Domains databases, and Phamerator 
        <xref ref-type="bibr" rid="R4">(Cresawn et al., 2011)</xref>
        , using Actino_draft database v578. Based on gene content similarity (GCS) of at least 35% to phages in the Actinobacteriophage database, phagesDB, BillyTP and MAnor were assigned to clusters AY and CT, respectively 
        <xref ref-type="bibr" rid="R15">(Russell and Hatfull, 2017; Pope et al., 2017)</xref>
        . Default settings were used for all software.
      </p>
      <p>
        A total of 96 protein-coding genes were predicted in the genome of BillyTP, and 45 genes were assigned a putative function. Of note are two putative tyrosine integrases. An immunity repressor could not be identified; however, two genes encoding helix-turn-helix DNA binding domain-containing proteins are located near the two tyrosine integrase genes, which is similar to most cluster AY phages 
        <xref ref-type="bibr" rid="R6">(Gavin et al., 2024)</xref>
        . Therefore, BillyTP is likely capable of establishing lysogeny. As with a majority of cluster AY phages, the ATPase and nuclease domains of the large terminase are encoded by two separate and consecutive genes. MAnor contains 73 putative protein-coding genes, and 35 genes were assigned a putative function. No immunity repressor or integrase could be identified, suggesting that MAnor is unlikely to establish lysogeny. Consistent with other CT phages, MAnor contains two consecutive lysinA genes, one encoding lysinA with a peptidase domain and the other with a hydrolase domain.
      </p>
      <p>
        <bold>Nucleotide sequence accession numbers</bold>
      </p>
      <p>BillyTP is available at GenBank with Accession No. PP978841 and Sequence Read Archive (SRA) No. SRR30907830. MAnor is available at GenBank with Accession No. PQ184784 and Sequence Read Archive (SRA) No. SRR30907825.</p>
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  <back>
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        <p>We are grateful for the training and support provided by HHMI and SEA-PHAGES, especially Deborah Jacobs-Sera, Dan Russell, and Vic Sivanathan. We would also like to thank the Biology Department at Spelman College for laboratory resources.</p>
      </sec>
    </ack>
    <ref-list>
      <ref id="R1">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Altschul</surname>
              <given-names>SF</given-names>
            </name>
            <name>
              <surname>Gish</surname>
              <given-names>W</given-names>
            </name>
            <name>
              <surname>Miller</surname>
              <given-names>W</given-names>
            </name>
            <name>
              <surname>Myers</surname>
              <given-names>EW</given-names>
            </name>
            <name>
              <surname>Lipman</surname>
              <given-names>DJ</given-names>
            </name>
          </person-group>
          <year>1990</year>
          <month>10</month>
          <day>5</day>
          <article-title>Basic local alignment search tool.</article-title>
          <source>J Mol Biol</source>
          <volume>215</volume>
          <issue>3</issue>
          <issn>0022-2836</issn>
          <fpage>403</fpage>
          <lpage>410</lpage>
          <pub-id pub-id-type="doi">10.1016/S0022-2836(05)80360-2</pub-id>
          <pub-id pub-id-type="pmid">2231712</pub-id>
        </element-citation>
      </ref>
      <ref id="R2">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Besemer</surname>
              <given-names>J</given-names>
            </name>
            <name>
              <surname>Borodovsky</surname>
              <given-names>M</given-names>
            </name>
          </person-group>
          <year>2005</year>
          <month>7</month>
          <day>1</day>
          <article-title>GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.</article-title>
          <source>Nucleic Acids Res</source>
          <volume>33</volume>
          <issue>Web Server issue</issue>
          <issn>0305-1048</issn>
          <fpage>W451</fpage>
          <lpage>W454</lpage>
          <pub-id pub-id-type="doi">10.1093/nar/gki487</pub-id>
          <pub-id pub-id-type="pmid">15980510</pub-id>
        </element-citation>
      </ref>
      <ref id="R3">
        <element-citation publication-type="other">
          <person-group person-group-type="author">
            <name>
              <surname>Busse</surname>
              <given-names>Hans‐Jürgen</given-names>
            </name>
            <name>
              <surname>Wieser</surname>
              <given-names>Monika</given-names>
            </name>
            <name>
              <surname>Buczolits</surname>
              <given-names>Sandra</given-names>
            </name>
          </person-group>
          <year>2015</year>
          <month>3</month>
          <day>18</day>
          <article-title>
            <italic>Arthrobacter</italic>
          </article-title>
          <source>Bergey's Manual of Systematics of Archaea and Bacteria</source>
          <fpage>1</fpage>
          <lpage>70</lpage>
          <pub-id pub-id-type="doi">10.1002/9781118960608.gbm00118</pub-id>
        </element-citation>
      </ref>
      <ref id="R4">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Cresawn</surname>
              <given-names>SG</given-names>
            </name>
            <name>
              <surname>Bogel</surname>
              <given-names>M</given-names>
            </name>
            <name>
              <surname>Day</surname>
              <given-names>N</given-names>
            </name>
            <name>
              <surname>Jacobs-Sera</surname>
              <given-names>D</given-names>
            </name>
            <name>
              <surname>Hendrix</surname>
              <given-names>RW</given-names>
            </name>
            <name>
              <surname>Hatfull</surname>
              <given-names>GF</given-names>
            </name>
          </person-group>
          <year>2011</year>
          <month>10</month>
          <day>12</day>
          <article-title>Phamerator: a bioinformatic tool for comparative bacteriophage genomics.</article-title>
          <source>BMC Bioinformatics</source>
          <volume>12</volume>
          <fpage>395</fpage>
          <lpage>395</lpage>
          <pub-id pub-id-type="doi">10.1186/1471-2105-12-395</pub-id>
          <pub-id pub-id-type="pmid">21991981</pub-id>
        </element-citation>
      </ref>
      <ref id="R5">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Delcher</surname>
              <given-names>AL</given-names>
            </name>
            <name>
              <surname>Bratke</surname>
              <given-names>KA</given-names>
            </name>
            <name>
              <surname>Powers</surname>
              <given-names>EC</given-names>
            </name>
            <name>
              <surname>Salzberg</surname>
              <given-names>SL</given-names>
            </name>
          </person-group>
          <year>2007</year>
          <month>1</month>
          <day>19</day>
          <article-title>Identifying bacterial genes and endosymbiont DNA with Glimmer.</article-title>
          <source>Bioinformatics</source>
          <volume>23</volume>
          <issue>6</issue>
          <issn>1367-4803</issn>
          <fpage>673</fpage>
          <lpage>679</lpage>
          <pub-id pub-id-type="doi">10.1093/bioinformatics/btm009</pub-id>
          <pub-id pub-id-type="pmid">17237039</pub-id>
        </element-citation>
      </ref>
      <ref id="R6">
        <mixed-citation>Gavin, H., Hare, R., Melton, J., Ng, R., Stoulig, T. T., Anders, K. R. (2024). Cluster AY Annotation Report. HHMI Science Education Alliance (SEA) Faculty Group, QUBES Educational Resources. doi:10.25334/DXMP-6S11</mixed-citation>
      </ref>
      <ref id="R7">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Gordon</surname>
              <given-names>D</given-names>
            </name>
            <name>
              <surname>Green</surname>
              <given-names>P</given-names>
            </name>
          </person-group>
          <year>2013</year>
          <month>8</month>
          <day>31</day>
          <article-title>Consed: a graphical editor for next-generation sequencing.</article-title>
          <source>Bioinformatics</source>
          <volume>29</volume>
          <issue>22</issue>
          <issn>1367-4803</issn>
          <fpage>2936</fpage>
          <lpage>2937</lpage>
          <pub-id pub-id-type="doi">10.1093/bioinformatics/btt515</pub-id>
          <pub-id pub-id-type="pmid">23995391</pub-id>
        </element-citation>
      </ref>
      <ref id="R8">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Hatfull</surname>
              <given-names>GF</given-names>
            </name>
            <name>
              <surname>Dedrick</surname>
              <given-names>RM</given-names>
            </name>
            <name>
              <surname>Schooley</surname>
              <given-names>RT</given-names>
            </name>
          </person-group>
          <year>2021</year>
          <month>8</month>
          <day>24</day>
          <article-title>Phage Therapy for Antibiotic-Resistant Bacterial Infections.</article-title>
          <source>Annu Rev Med</source>
          <volume>73</volume>
          <issn>0066-4219</issn>
          <fpage>197</fpage>
          <lpage>211</lpage>
          <pub-id pub-id-type="doi">10.1146/annurev-med-080219-122208</pub-id>
          <pub-id pub-id-type="pmid">34428079</pub-id>
        </element-citation>
      </ref>
      <ref id="R9">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Li</surname>
              <given-names>SY</given-names>
            </name>
            <name>
              <surname>Kao</surname>
              <given-names>CC</given-names>
            </name>
            <name>
              <surname>Hu</surname>
              <given-names>YC</given-names>
            </name>
            <name>
              <surname>Lai</surname>
              <given-names>CH</given-names>
            </name>
            <name>
              <surname>Jiang</surname>
              <given-names>YP</given-names>
            </name>
            <name>
              <surname>Mao</surname>
              <given-names>YC</given-names>
            </name>
            <name>
              <surname>Huang</surname>
              <given-names>YT</given-names>
            </name>
            <name>
              <surname>Liu</surname>
              <given-names>PY</given-names>
            </name>
          </person-group>
          <year>2021</year>
          <month>4</month>
          <day>8</day>
          <article-title>Arthrobacter woluwensis Bacteremia: A Clinical and Genomic Report.</article-title>
          <source>Pathogens</source>
          <volume>10</volume>
          <issue>4</issue>
          <issn>2076-0817</issn>
          <pub-id pub-id-type="doi">10.3390/pathogens10040443</pub-id>
          <pub-id pub-id-type="pmid">33917709</pub-id>
        </element-citation>
      </ref>
      <ref id="R10">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Miller</surname>
              <given-names>JR</given-names>
            </name>
            <name>
              <surname>Koren</surname>
              <given-names>S</given-names>
            </name>
            <name>
              <surname>Sutton</surname>
              <given-names>G</given-names>
            </name>
          </person-group>
          <year>2010</year>
          <month>3</month>
          <day>6</day>
          <article-title>Assembly algorithms for next-generation sequencing data.</article-title>
          <source>Genomics</source>
          <volume>95</volume>
          <issue>6</issue>
          <issn>0888-7543</issn>
          <fpage>315</fpage>
          <lpage>327</lpage>
          <pub-id pub-id-type="doi">10.1016/j.ygeno.2010.03.001</pub-id>
          <pub-id pub-id-type="pmid">20211242</pub-id>
        </element-citation>
      </ref>
      <ref id="R11">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Pope</surname>
              <given-names>WH</given-names>
            </name>
            <name>
              <surname>Mavrich</surname>
              <given-names>TN</given-names>
            </name>
            <name>
              <surname>Garlena</surname>
              <given-names>RA</given-names>
            </name>
            <name>
              <surname>Guerrero-Bustamante</surname>
              <given-names>CA</given-names>
            </name>
            <name>
              <surname>Jacobs-Sera</surname>
              <given-names>D</given-names>
            </name>
            <name>
              <surname>Montgomery</surname>
              <given-names>MT</given-names>
            </name>
            <name>
              <surname>Russell</surname>
              <given-names>DA</given-names>
            </name>
            <name>
              <surname>Warner</surname>
              <given-names>MH</given-names>
            </name>
            <collab>Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES)</collab>
            <name>
              <surname>Hatfull</surname>
              <given-names>GF</given-names>
            </name>
          </person-group>
          <year>2017</year>
          <month>8</month>
          <day>15</day>
          <article-title>Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.</article-title>
          <source>mBio</source>
          <volume>8</volume>
          <issue>4</issue>
          <pub-id pub-id-type="doi">10.1128/mBio.01069-17</pub-id>
          <pub-id pub-id-type="pmid">28811342</pub-id>
        </element-citation>
      </ref>
      <ref id="R12">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Pope</surname>
              <given-names>WH</given-names>
            </name>
            <name>
              <surname>Jacobs-Sera</surname>
              <given-names>D</given-names>
            </name>
          </person-group>
          <year>2018</year>
          <article-title>Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.</article-title>
          <source>Methods Mol Biol</source>
          <volume>1681</volume>
          <issn>1064-3745</issn>
          <fpage>217</fpage>
          <lpage>229</lpage>
          <pub-id pub-id-type="doi">10.1007/978-1-4939-7343-9_16</pub-id>
          <pub-id pub-id-type="pmid">29134598</pub-id>
        </element-citation>
      </ref>
      <ref id="R13">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Ramanan</surname>
              <given-names>P</given-names>
            </name>
            <name>
              <surname>Deziel</surname>
              <given-names>PJ</given-names>
            </name>
            <name>
              <surname>Wengenack</surname>
              <given-names>NL</given-names>
            </name>
          </person-group>
          <year>2013</year>
          <month>7</month>
          <day>24</day>
          <article-title>Gordonia bacteremia.</article-title>
          <source>J Clin Microbiol</source>
          <volume>51</volume>
          <issue>10</issue>
          <issn>0095-1137</issn>
          <fpage>3443</fpage>
          <lpage>3447</lpage>
          <pub-id pub-id-type="doi">10.1128/JCM.01449-13</pub-id>
          <pub-id pub-id-type="pmid">23884999</pub-id>
        </element-citation>
      </ref>
      <ref id="R14">
        <mixed-citation>Rinehart CA, Gaffney B, Wood, JD, Smith J. 2016. PECAAN, a Phage Evidence Collection and Annotation Network. https://discover.kbrinsgd.org/login</mixed-citation>
      </ref>
      <ref id="R15">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Russell</surname>
              <given-names>DA</given-names>
            </name>
            <name>
              <surname>Hatfull</surname>
              <given-names>GF</given-names>
            </name>
          </person-group>
          <year>2017</year>
          <month>3</month>
          <day>1</day>
          <article-title>PhagesDB: the actinobacteriophage database.</article-title>
          <source>Bioinformatics</source>
          <volume>33</volume>
          <issue>5</issue>
          <issn>1367-4803</issn>
          <fpage>784</fpage>
          <lpage>786</lpage>
          <pub-id pub-id-type="doi">10.1093/bioinformatics/btw711</pub-id>
          <pub-id pub-id-type="pmid">28365761</pub-id>
        </element-citation>
      </ref>
      <ref id="R16">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Russell</surname>
              <given-names>DA</given-names>
            </name>
          </person-group>
          <year>2018</year>
          <article-title>Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.</article-title>
          <source>Methods Mol Biol</source>
          <volume>1681</volume>
          <issn>1064-3745</issn>
          <fpage>109</fpage>
          <lpage>125</lpage>
          <pub-id pub-id-type="doi">10.1007/978-1-4939-7343-9_9</pub-id>
          <pub-id pub-id-type="pmid">29134591</pub-id>
        </element-citation>
      </ref>
      <ref id="R17">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Söding</surname>
              <given-names>J</given-names>
            </name>
            <name>
              <surname>Biegert</surname>
              <given-names>A</given-names>
            </name>
            <name>
              <surname>Lupas</surname>
              <given-names>AN</given-names>
            </name>
          </person-group>
          <year>2005</year>
          <month>7</month>
          <day>1</day>
          <article-title>The HHpred interactive server for protein homology detection and structure prediction.</article-title>
          <source>Nucleic Acids Res</source>
          <volume>33</volume>
          <issue>Web Server issue</issue>
          <issn>0305-1048</issn>
          <fpage>W244</fpage>
          <lpage>W248</lpage>
          <pub-id pub-id-type="doi">10.1093/nar/gki408</pub-id>
          <pub-id pub-id-type="pmid">15980461</pub-id>
        </element-citation>
      </ref>
      <ref id="R18">
        <element-citation publication-type="journal">
          <person-group person-group-type="author">
            <name>
              <surname>Strathdee</surname>
              <given-names>SA</given-names>
            </name>
            <name>
              <surname>Hatfull</surname>
              <given-names>GF</given-names>
            </name>
            <name>
              <surname>Mutalik</surname>
              <given-names>VK</given-names>
            </name>
            <name>
              <surname>Schooley</surname>
              <given-names>RT</given-names>
            </name>
          </person-group>
          <year>2023</year>
          <month>1</month>
          <day>5</day>
          <article-title>Phage therapy: From biological mechanisms to future directions.</article-title>
          <source>Cell</source>
          <volume>186</volume>
          <issue>1</issue>
          <issn>0092-8674</issn>
          <fpage>17</fpage>
          <lpage>31</lpage>
          <pub-id pub-id-type="doi">10.1016/j.cell.2022.11.017</pub-id>
          <pub-id pub-id-type="pmid">36608652</pub-id>
        </element-citation>
      </ref>
    </ref-list>
  </back>
</article>