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<article article-type="brief-report" xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>microPublication Biology</journal-title>
      </journal-title-group>
      <issn pub-type="epub">2578-9430</issn>
      <publisher>
        <publisher-name>Caltech Library</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.17912/micropub.biology.001396</article-id>
      <article-id pub-id-type="accession" assigning-authority="wormbase">WBPaper00067536</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>new finding</subject>
        </subj-group>
        <subj-group subj-group-type="heading">
          <subject>replication successful</subject>
        </subj-group>
        <subj-group subj-group-type="heading">
          <subject>materials and reagents</subject>
        </subj-group>
        <subj-group subj-group-type="heading">
          <subject>negative result</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>phenotype data</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>interaction data</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>genotype data</subject>
        </subj-group>
        <subj-group subj-group-type="species">
          <subject>c. elegans</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>
          Loss of function in 
          <italic>rpms-1</italic>
           does not enhance phenotypes of 
          <italic>rpm-1</italic>
           mutants
        </article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <name>
            <surname>Sun</surname>
            <given-names>Yue</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Conceptualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/onceptualization">Conceptualization</role>
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          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing - review &amp; editing" vocab-term-identifier="https://credit.niso.org/contributor-roles/Writing-review-editing">Writing - review &amp; editing</role>
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          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Gaio</surname>
            <given-names>Daniela</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Methodology" vocab-term-identifier="https://credit.niso.org/contributor-roles/methodology">Methodology</role>
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          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Xie</surname>
            <given-names>Bokun</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Formal analysis" vocab-term-identifier="https://credit.niso.org/contributor-roles/formal-analysis">Formal analysis</role>
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          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Writing - original draft" vocab-term-identifier="https://credit.niso.org/contributor-roles/writing-original-draft">Writing - original draft</role>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Methodology" vocab-term-identifier="https://credit.niso.org/contributor-roles/methodology">Methodology</role>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Noma</surname>
            <given-names>Kentaro</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Conceptualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/onceptualization">Conceptualization</role>
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          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Wu</surname>
            <given-names>Zilu</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Investigation" vocab-term-identifier="https://credit.niso.org/contributor-roles/investigation">Investigation</role>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Jin</surname>
            <given-names>Yishi</given-names>
          </name>
          <role vocab="credit" vocab-identifier="https://credit.niso.org/" vocab-term="Conceptualization" vocab-term-identifier="https://credit.niso.org/contributor-roles/onceptualization">Conceptualization</role>
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          <xref ref-type="aff" rid="aff1">1</xref>
          <xref ref-type="corresp" rid="cor1">§</xref>
        </contrib>
        <aff id="aff1">
          <label>1</label>
          University of California, San Diego, La Jolla, California, United States
        </aff>
      </contrib-group>
      <contrib-group>
        <contrib contrib-type="reviewer">
          <anonymous/>
        </contrib>
      </contrib-group>
      <author-notes>
        <corresp id="cor1">
          <label>§</label>
          Correspondence to: Yishi Jin (
          <email>yijin@ucsd.edu</email>
          )
        </corresp>
        <fn fn-type="coi-statement">
          <p>The authors declare that there are no conflicts of interest present.</p>
        </fn>
      </author-notes>
      <pub-date date-type="pub" publication-format="electronic">
        <day>5</day>
        <month>12</month>
        <year>2024</year>
      </pub-date>
      <pub-date date-type="collection" publication-format="electronic">
        <year>2024</year>
      </pub-date>
      <volume>2024</volume>
      <elocation-id>10.17912/micropub.biology.001396</elocation-id>
      <history>
        <date date-type="received">
          <day>24</day>
          <month>10</month>
          <year>2024</year>
        </date>
        <date date-type="rev-recd">
          <day>27</day>
          <month>11</month>
          <year>2024</year>
        </date>
        <date date-type="accepted">
          <day>3</day>
          <month>12</month>
          <year>2024</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 by the authors</copyright-statement>
        <copyright-year>2024</copyright-year>
        <license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
          <license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <p>
          The 
          <italic>
            <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&amp;id=6239">C. elegans</ext-link>
          </italic>
          E3 ubiquitin ligase 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">RPM-1</ext-link>
           consists of 3,766 amino acids, with a RING finger domain at the C-terminus that functions to target the 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
           kinase for degradation for synapse development and axon termination. 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
             (
          </italic>
          for 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
             short, 
          </italic>
          aka 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">F07B7.12</ext-link>
          <italic>) </italic>
          resides 35 kb away from 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
          on chromosome V, and is a near-perfect 12 kb duplication of 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
            , 
          </italic>
          including the entire promoter region and coding sequences. 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">RPMS-1</ext-link>
           consists of 1,964 amino acids and is identical to the N-terminal half of 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">RPM-1</ext-link>
          , except the last 40 amino acids. Previous studies showed that transgenic overexpression of the duplicated region of 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
            (+)
          </italic>
           did not rescue synapse defects of 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
          loss of function mutants. Here, using CRISPR editing, we generated a double knockout of 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
           and 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          </italic>
          . We find that axon and synapse defects in 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          </italic>
          double mutants resemble those in 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
          single mutants. Expression levels of endogenously tagged 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
           protein are increased to a comparable degree in 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
          and 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          </italic>
          mutants, compared to the control. These data, along with previous transgene expression analysis, support the idea that
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          </italic>
          does not have a major role in RPM-1-mediated cellular processes.
        </p>
      </abstract>
      <funding-group>
        <funding-statement>This work was supported by grants from NIH: R37 NS 035546 and R35 NS127314 (Y. J.)</funding-statement>
      </funding-group>
    </article-meta>
  </front>
  <body>
    <fig position="anchor" id="f1">
      <label>
        Figure 1. 
        <bold>
          Double mutants of 
          <italic>rpm-1 rpms-1 </italic>
          resemble 
          <italic>rpm-1 </italic>
          single mutants
        </bold>
      </label>
      <caption>
        <p>
          A. Schematics of 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          </italic>
          and 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          </italic>
           gene model. Black boxes represent exons. Blue arrowheads point at gRNA targeting sites for CRISPR-Cas9 genome editing. The deletion alleles 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          </italic>
           and 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          </italic>
           result in truncated proteins due to frameshift followed by premature stop codons.
        </p>
        <p>
          B. Quantification of axon termination defects and absence of synapse branch of PLM neuron visualized by 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
            (
            <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
            p::GFP)
          </italic>
          . Numbers of animals analyzed are shown below the bar graphs. Statistics: one-way ANOVA test for multiple comparison corrected with the false discovery rate (FDR) method of Benjamini and Hochberg. Error bars: SEM. ****p&lt;0.0001, *0.01&lt;p&lt;0.05, ns=p&gt;0.05.
        </p>
        <p>
          C. Quantification of the total number of synaptic puncta of GABAergic neurons in the dorsal nerve cord (DNC) visualized by 
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00000707">juIs1</ext-link>
            (unc-25p::SNB-1::GFP)
          </italic>
          . Numbers of animals analyzed are shown in the bar graphs. Statistics: unpaired t test. Error bars: SEM. ns=p&gt;0.05.
        </p>
        <p>
          D. Representative images of knock in GFP::
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
          (
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
          </italic>
          ) in the nerve ring region. White dashes outline the region of interest (ROI) for quantification in E. Scale bar: 20 µm.
        </p>
        <p>
          E. Quantification of the fluorescence intensity of GFP::
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
          (
          <italic>
            <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
          </italic>
          ) normalized to the average value of wildtype (wt) animals. Numbers of animals analyzed are shown below the bar graphs. Statistics: one-way ANOVA test for multiple comparison corrected with the false discovery rate (FDR) method of Benjamini and Hochberg. Error bars: SEM. ****p&lt;0.0001, ns=p&gt;0.05.
        </p>
        <p>F. Quantification of PLM axon regrowth length after laser axotomy, normalized to the average value of wildtype (wt) animals. Numbers of animals analyzed are shown below the bar graphs. Statistics: one-way ANOVA test for multiple comparison corrected with the false discovery rate (FDR) method of Benjamini and Hochberg. Error bars: SEM. ns=p&gt;0.05.</p>
      </caption>
      <graphic xlink:href="25789430-2024-micropub.biology.001396"/>
    </fig>
    <sec>
      <title>Description</title>
      <p>
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
         encodes an E3 ubiquitin ligase of 3766 amino acids, containing multiple domains that include an RCC1 like domain at the N-terimus, PHR domains in the middle, and a RING domain and a zinc finger box domain at the C-terminus 
        <xref ref-type="bibr" rid="R2">(Schaefer et al., 2000; Zhen et al., 2000)</xref>
        . Loss of function of 
        <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">RPM-1</ext-link>
         causes abnormal presynaptic development in several types of neurons, including the GABAergic motor neurons 
        <xref ref-type="bibr" rid="R1">(Zhen et al., 2000)</xref>
         and touch receptor neurons 
        <xref ref-type="bibr" rid="R2">(Schaefer et al., 2000)</xref>
        , as well as overextension of touch neuron axons 
        <xref ref-type="bibr" rid="R4">(Grill et al., 2007)</xref>
        . During the cloning of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        <xref ref-type="bibr" rid="R2">(Schaefer et al., 2000; Zhen et al., 2000)</xref>
        , it was discovered that
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">F07B7.12</ext-link>
        </italic>
        , located at 35 kb away from 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
         (
        <bold>Figure</bold>
        <bold>1A</bold>
        ), is a near-perfect genomic duplication of 12 kb of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        from the promoter region to coding sequences for ~1900 amino acids, hence named as 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
         (
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        <underline>s</underline>
        hort). A transgene expressing the duplicated region of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        in an 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        null mutant did not rescue synapse defects, showing that 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
         cannot compensate for the function of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        <xref ref-type="bibr" rid="R1">(Zhen et al., 2000)</xref>
        . To address the role of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
        in 
        <italic>rpm-1-</italic>
        mediated function directly, we used CRISPR editing to generate a double knockout of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        and 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          .
        </italic>
      </p>
      <p>
        As 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
         and 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
         have nearly identical sequences, sgRNAs designed for 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
         also bind 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
         and result in similar genome editing. We thus took advantage of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         animals, which have 2,221-bp deletion, removing part of large exon 6 and exon 7 and causing protein truncation due to frameshift. We designed two sgRNAs within the 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
        </italic>
         deletion region. Using the co-CRISPR strategy 
        <xref ref-type="bibr" rid="R6">(Friedland et al., 2013)</xref>
        , we generated a new allele 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
        </italic>
        , which is a 1,218-bp deletion in exon 6 of 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
        and causes frameshift followed by a premature stop codon. The 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          )
        </italic>
         animals are homozygous viable, grossly indistinguishable from 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ).
        </italic>
         We examined touch receptor neuron morphology and GABAergic neuron synapses, and found no significant differences in axon overextension or synaptic puncta, with double mutants showing a slight reduction in touch neuron synapse branches (
        <bold>Figure</bold>
        <bold>1B, 1C</bold>
        ). 
        <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
         is negatively regulated by 
        <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">RPM-1</ext-link>
         via protein degradation 
        <xref ref-type="bibr" rid="R3">(Nakata et al., 2005)</xref>
        . We measured the fluorescence intensity of endogenously expressed GFP::
        <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">DLK-1</ext-link>
        (
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
        </italic>
        ) as previously described 
        <xref ref-type="bibr" rid="R7">(Sun and Jin, 2023)</xref>
        , and did not detect a significant difference between the single and double mutant (
        <bold>Figure</bold>
        <bold>1D, 1E</bold>
        ). Moreover, after axon injury by laser axotomy, both 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        and 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
        mutants showed axon regrowth to a similar level, comparable to that of control (
        <bold>Figure</bold>
        <bold>1F</bold>
        ). Together, these analyses show that 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
        </italic>
         does not contribute to 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
        </italic>
        mediated regulation of neuronal development.
      </p>
    </sec>
    <sec>
      <title>Methods</title>
      <p>1. CRISPR-Cas9 mediated genome editing</p>
      <p>
        We used CRISPR sgRNA design tool 
        <ext-link ext-link-type="uri" xlink:href="http://crispr.mit.edu/">http://crispr.mit.edu</ext-link>
         (Feng Zhang's lab). Mutagenesis primers were ordered (EtonBio) and used to insert sgRNAs into 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001168">eft-3</ext-link>
          p
        </italic>
        ::cas9-NLS-pU6 empty vectors by Phusion PCR. Plasmids were treated with DpnI to digest plasmids of bacteria origin (methylated). DH5α transformation followed. The following plasmids were obtained and sequenced: pCZ890 (sgRNA#1) and pKEN268 (sgRNA#2). 
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060697">CZ3007</ext-link>
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         worms were injected with 50 ng/μl of each plasmid DNA and 5 ng/μl pCFJ104 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003515">myo-3</ext-link>
          p
        </italic>
        ::RFP co-injection marker. F1 positive worms were let lay enough eggs and genotyped with primers YJ10660 (5'-ACCGATATGACTGGATATGAAAATCGTC) and YJ11134 (5'-GGCCATTCGCTCCCATAAC) for
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          ).
        </italic>
      </p>
      <p>2. Laser axotomy</p>
      <p>
        We cut PLM axons in anesthetized L4 worms using a near-infrared Ti-Sapphire laser (KMLabs) as described 
        <xref ref-type="bibr" rid="R5">(Wu et al., 2007)</xref>
        . We used 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
        (
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
          p
        </italic>
        ::GFP) to visualize touch neuron morphology and axon regeneration. To anesthetize worms for surgery and imaging, we put animals in the agar pad and used 0.1~1% 1-phenoxy-2-propanol in M9 buffer. For confocal imaging, we used an LSM710 confocal microscope to take Z-stack images of live anesthetized worms. Representative images for axon regrowth are projections or single layers of Z-stack images. Regrowth lengths were measured from maximum transparency projections of one single z-stack using Zeiss AIM software.
      </p>
      <p>3. Fluorescence microscopy and GFP intensity measurement</p>
      <p>Confocal images of the nerve ring region were collected from L4 immobilized in 2 mM levamisole (Sigma) in M9 buffer using a Zeiss LSM710 confocal microscope. Projections of Z-stack images (1 μm/section) are shown in the figure. GFP intensity from the region of interest (ROI) was analyzed in ImageJ, and the graph was generated in GraphPad Prism.</p>
      <p>4. Statistics</p>
      <p>For comparisons involving multiple groups, we used one-way ANOVA in GraphPad Prism. When comparing two groups, we used an unpaired t test with two-tailed P value.</p>
    </sec>
    <sec>
      <title>Reagents</title>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060697">CZ3007</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00000707">juIs1</ext-link>
        </italic>
        [
        <italic>unc-25p::</italic>
        SNB-1::GFP]; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060698">CZ9840</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
         [
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
          p
        </italic>
        ::GFP] II; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00056491">CZ10969</ext-link>
        :
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
        [
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
        </italic>
        p::GFP] II
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060699">CZ22189</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00000707">juIs1</ext-link>
        </italic>
        [
        <italic>unc-25p::</italic>
        SNB-1::GFP]; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
           (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
           (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          ) 
        </italic>
        V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060700">CZ22190</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060701">CZ22191</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
        ; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060702">CZ26773</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
        [
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
          p
        </italic>
        ::GFP] II; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060703">CZ26774</ext-link>
        : 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBTransgene00001042">muIs32</ext-link>
        </italic>
        [
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00003171">mec-7</ext-link>
          p
        </italic>
        ::GFP] II; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00056495">CZ25941</ext-link>
        : GFP::
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">dlk-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
          )
        </italic>
         I
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060704">CZ26775</ext-link>
        : GFP::
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">dlk-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
          )
        </italic>
         I; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          ) 
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00017190">rpms-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159935">ju1285</ext-link>
          )
        </italic>
         V
      </p>
      <p>
        <ext-link ext-link-type="wormbase" xlink:href="WBStrain00060705">CZ26787</ext-link>
        : GFP::
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00001008">dlk-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar02159169">ju1579</ext-link>
          )
        </italic>
         I; 
        <italic>
          <ext-link ext-link-type="wormbase" xlink:href="WBGene00004457">rpm-1</ext-link>
          (
          <ext-link ext-link-type="wormbase" xlink:href="WBVar00091661">ok364</ext-link>
          )
        </italic>
         V
      </p>
    </sec>
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