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<article article-type="brief-report" xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>microPublication Biology</journal-title>
      </journal-title-group>
      <issn pub-type="epub">2578-9430</issn>
      <publisher>
        <publisher-name>Caltech Library</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.17912/micropub.biology.001287</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>new finding</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>genetic screens</subject>
        </subj-group>
        <subj-group subj-group-type="species">
          <subject>s. pombe</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>
          Characterization of a valproic acid-sensitive mutant allele of the Golgi GDP-mannose transmembrane transporter Vrg4 in 
          <italic>Schizosaccharomyces pombe</italic>
        </article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" equal-contrib="yes">
          <name>
            <surname>Takasaki</surname>
            <given-names>Teruaki</given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author" equal-contrib="yes">
          <name>
            <surname>Yamada</surname>
            <given-names>Minami</given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Ikeda</surname>
            <given-names>Haruka</given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Fang</surname>
            <given-names>Yue</given-names>
          </name>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Sugiura</surname>
            <given-names>Reiko </given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
          <xref ref-type="corresp" rid="cor1">§</xref>
        </contrib>
        <aff id="aff1">
          <label>1</label>
          Department of Pharmaceutical Sciences, Faculty of Pharmacy, Kindai University, Osaka, Japan
        </aff>
        <aff id="aff2">
          <label>2</label>
          Department of Microbial and Biochemical Pharmacy, School of Pharmacy, China Medical University, Shenyang, Liaoning, China
        </aff>
      </contrib-group>
      <contrib-group>
        <contrib contrib-type="reviewer">
          <anonymous/>
        </contrib>
      </contrib-group>
      <author-notes>
        <corresp id="cor1">
          <label>§</label>
          Correspondence to: Reiko  Sugiura (
          <email>sugiurar@phar.kindai.ac.jp</email>
          )
        </corresp>
        <fn fn-type="coi-statement">
          <p>The authors declare that there are no conflicts of interest present.</p>
        </fn>
      </author-notes>
      <pub-date date-type="pub" publication-format="electronic">
        <day>23</day>
        <month>8</month>
        <year>2024</year>
      </pub-date>
      <pub-date date-type="collection" publication-format="electronic">
        <year>2024</year>
      </pub-date>
      <volume>2024</volume>
      <elocation-id>10.17912/micropub.biology.001287</elocation-id>
      <history>
        <date date-type="received">
          <day>17</day>
          <month>7</month>
          <year>2024</year>
        </date>
        <date date-type="rev-recd">
          <day>10</day>
          <month>8</month>
          <year>2024</year>
        </date>
        <date date-type="accepted">
          <day>20</day>
          <month>8</month>
          <year>2024</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 by the authors</copyright-statement>
        <copyright-year>2024</copyright-year>
        <license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
          <license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <p>
          Valproic acid (VPA) is a widely used drug for epilepsy. However, precise molecular mechanisms relevant to VPA's side effects remain elusive. This study identifies a VPA-sensitive mutant strain (
          <italic>vas21</italic>
          ) in fission yeast with a missense mutation (T256I) in the nucleotide sugar-binding motif of the GDP-mannose transporter 
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
          . This mutation impairs protein glycosylation, as evidenced by altered acid phosphatase mobility. We also found that 
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
           overexpression deteriorates cell growth. Our results highlight the role of 
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
           in glycosylation and implicate impaired glycosylation as a potential mechanism underlying VPA sensitivity. The new allele of 
          <italic>
            <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
          </italic>
           will be useful in glycobiology and pharmacology.
        </p>
      </abstract>
      <funding-group>
        <funding-statement>This study was supported by JSPS KAKENHI Grant Numbers JP20K07058 (T.T.), JP24K09826 (T.T.) and JP19H03376 (R.S.). This work was also supported by a grant from the Antiaging Project for Private Universities (R.S.).</funding-statement>
      </funding-group>
    </article-meta>
  </front>
  <body>
    <fig position="anchor" id="f1">
      <label>
        Figure 1. 
        <bold>
          Characterization of valproic acid sensitive mutant 
          <italic>vas21</italic>
        </bold>
      </label>
      <caption>
        <p>
          <bold>A:</bold>
           Wild-type (WT) and 
          <italic>vas21 </italic>
          mutant strains transformed with pREP1-GFP vector were streaked onto the Edinburgh Minimal Media (EMM) plus thiamine (EMMT) plates with or without 6 mM VPA and incubated for 3 days at 27°C. 
          <bold>B: </bold>
          WT and 
          <italic>vas21</italic>
           strains were transformed with the control vector (pREP1-GFP) or the vector containing 
          <italic>
            <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
          </italic>
          <sup>+</sup>
           and spotted as indicated on the EMM or EMMT plates with or without 6 mM VPA in serial 10-fold dilutions. The plates were incubated for 3 days at 27 °C. 
          <bold>C:</bold>
           DNA sequencing revealed a missense mutation in the 
          <italic>vrg4-21</italic>
           allele. The arrow indicates the single nucleotide change from C to T in the 265
          <sup>th</sup>
           codon.
          <bold> D:</bold>
           Positional relationship of the 
          <italic>vrg4-21</italic>
           and 
          <italic>vas4-1</italic>
           mutation sites. The images of the predicted 3D structure were obtained from PomBase (www.pombase.org) (Jumper et al. 2021; Varadi et al. 2024; Rutherford et al. 2024). 
          <bold>E:</bold>
           Acid phosphatase glycosylation in WT and 
          <italic>vas21</italic>
           mutant cells. Cell lysates were separated by 6% native polyacrylamide gel electrophoresis and acid phosphatase was stained with Fast Blue B salt and 1-naphthyl phosphate.
        </p>
      </caption>
      <graphic xlink:href="25789430-2024-micropub.biology.001287"/>
    </fig>
    <sec>
      <title>Description</title>
      <p>
        Valproic acid (VPA, 2-n-propyl pentanoic acid) is a short-chain fatty acid that is widely prescribed as a medication for the treatment of epilepsy, bipolar disorders, and migraine prophylaxis 
        <xref ref-type="bibr" rid="R10">(Linde et al. 2013; Romoli et al. 2019)</xref>
        . It was first approved for use as an antiepileptic agent in France in 1967 and is now approved in more than one hundred countries 
        <xref ref-type="bibr" rid="R3">(Bhushan 2003)</xref>
        . Although VPA activity as an anti-convulsant is considered to be mediated by a rise in glutamatergic and γ-aminobutyric acid in the brain, recent progress unraveled novel pharmacological activities associated with VPA, including inhibition of histone deacetylases (HDACs) or blockade of voltage-gated ion channels. Thus, VPA has attracted increasing attention as a versatile drug with multifaceted mechanisms of action promising for various diseases, including certain types of cancers, mellitus, kidney disorders, neurodegenerative diseases, cardiovascular disorders, and muscular dystrophy 
        <xref ref-type="bibr" rid="R26">(Singh et al. 2021)</xref>
        .
      </p>
      <p>
        VPA can induce various side effects, including vomiting, heartburn, nausea, weight gain, dermatological side effects dosage-related tremors, and neurological side effects including ataxia, sleepiness, and irritability. It can also induce some serious disorders, such as thrombocytopenia, hyperammonemia, Parkinsonism, and birth defects 
        <xref ref-type="bibr" rid="R6">(DiLiberti et al. 1984; Nau et al. 1991; Ibadova 2017; Baddour et al. 2018; Muralidharan et al. 2020)</xref>
        . Predicting a patient's response to VPA remains difficult, in part because the relevance between side effects and genetic predisposition is unclear.
      </p>
      <p>
        To gain insight into the molecular basis that could influence VPA's efficacy and side effects, we have previously established a genetic screening for 
        <underline>V</underline>
        alproic 
        <underline>A</underline>
        cid 
        <underline>S</underline>
        ensitive (
        <italic>vas</italic>
        ) strains in fission yeast that had been mutagenized with nitrosoguanidine 
        <xref ref-type="bibr" rid="R29">(Zhang et al. 2000)</xref>
        . This screening has successfully identified several mutations that were mapped to the 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC2G11.03c">vps45</ext-link>
        </italic>
        , 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC13G6.14">aps1</ext-link>
        </italic>
        , and 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
        loci 
        <xref ref-type="bibr" rid="R13">(Miyatake et al. 2007; Ma et al. 2009; Qiao et al. 2021)</xref>
        . 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         is a GDP-mannose transporter localized to the Golgi, which is crucial for glycoprotein modification 
        <xref ref-type="bibr" rid="R4">(Bredeston et al. 2016)</xref>
        . One of our 
        <italic>vas</italic>
         strains 
        <italic>vas4-1</italic>
         has been shown to harbor double missense mutations (S263 and A271) in the nucleotide sugar-binding motif of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
        . Furthermore, although the two mutation sites had little effect on the overall structure of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
        , they impaired the glycosylation of proteins, including the cell surface glycoprotein acid phosphatase 
        <xref ref-type="bibr" rid="R19">(Qiao et al. 2021)</xref>
        . In this study, we identified another allele of 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
         by analyzing the previously uncharacterized 
        <italic>vas </italic>
        strain (
        <italic>vas</italic>
        21).
      </p>
      <p>
        As shown in 
        <xref ref-type="fig" rid="f1">Figure 1A, </xref>
        the 
        <italic>vas21</italic>
         mutant strain grew similarly (only slightly slower) to the wild-type cells under normal culture conditions. However, the 
        <italic>vas21</italic>
         mutant cells exhibited a significant reduction in growth in the medium containing 6 mM VPA, a concentration that did not influence the growth of WT cells. To identify the mutated gene, we screened a fission yeast genomic library and cloned the 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
        <sup>+</sup>
         gene that complements the VPA sensitivity of 
        <italic>vas21</italic>
         mutant cells. The result was confirmed by subcloning the 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
        <sup>+</sup>
         gene into the thiamine-regulatable expression vector pREP1, which induces a wide dynamic range of expression, with low expression in the presence of thiamine and high expression in the absence of thiamine 
        <xref ref-type="bibr" rid="R12">(Maundrell 1993; Moreno et al. 2000)</xref>
        . The growth defect of 
        <italic>vas21</italic>
         on the VPA-containing medium was fully recovered by transformation with the vector containing 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
          <sup>+</sup>
        </italic>
        (
        <xref ref-type="fig" rid="f1">Figure 1B, </xref>
        middle panels). Therefore, considering the involvement of 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
          <sup>+</sup>
        </italic>
        in the VPA sensitivity of 
        <italic>vas21,</italic>
         we designated 
        <italic>vas21</italic>
         as 
        <italic>vrg4-21. </italic>
        As an unexpected finding, high-level induction of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         deteriorated cell growth in both WT and 
        <italic>vas21 </italic>
        cells despite the absence of VPA (
        <xref ref-type="fig" rid="f1">Figure 1B, </xref>
        right panels). Therefore, overexpression of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         may induce a toxic effect on cell growth.
      </p>
      <p>
        To identify the mutation site, the 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
         locus of the 
        <italic>vrg4-21</italic>
         allele was isolated by PCR amplification and subjected to Sanger sequencing. A single nucleotide change was identified at the 256th codon, which causes a substitution from the hydrophilic Thr residue to hydrophobic Ile in the nucleotide sugar-binding motif (
        <xref ref-type="fig" rid="f1">Figure 1C</xref>
        ). Notably, the mutated residue in 
        <italic>vrg4-21</italic>
         is located between the two mutated residues found in 
        <italic>vas4-1</italic>
         (
        <xref ref-type="fig" rid="f1">Figure 1D</xref>
        ).
      </p>
      <p>
        Given that 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         is a putative Golgi-located GDP-mannose transporter, we examined the impact of the 
        <italic>vrg4-21</italic>
         mutation on glycosylation. For this purpose, we analyzed the mobility of acid phosphatase—a well-documented substrate for 
        <italic>N</italic>
        -linked glycosylation 
        <xref ref-type="bibr" rid="R24">(Schwaninger et al. 1990)</xref>
         and a well-established marker for investigating impairments in glycosylation status induced by mutations 
        <xref ref-type="bibr" rid="R7">(Huang and Snider 1995; Ohashi et al. 2020; Tanaka et al. 2021)</xref>
        —using native gel electrophoresis. We found that acid phosphatase isolated from 
        <italic>vas21</italic>
         mutant cells migrated signiﬁcantly faster than that from WT cells (
        <xref ref-type="fig" rid="f1">Figure 1E</xref>
        ), suggesting the impaired protein glycosylation in 
        <italic>vas21</italic>
         mutant.
      </p>
      <p>
        Collectively, our data are consistent with the previous finding that the amino acid sequences in the nucleotide sugar-binding motif of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         are important for conducting proper glycosylation. However, it is still unclear why the malfunction of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         affects the sensitivity to VPA. In budding yeast, 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
        p is essential for cell wall integrity (CWI) and normal Golgi function, and the null mutant is lethal 
        <xref ref-type="bibr" rid="R18">(Poster and Dean 1996; Dean et al. 1997)</xref>
        . Fission yeast ∆
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
        </italic>
         mutant cells also display severe growth defects with impaired cell wall synthesis, morphological aberrations, and agglutination tendencies 
        <xref ref-type="bibr" rid="R4">(Bredeston et al. 2016)</xref>
        . Considering that the null mutants are more severe than the missense alleles, VPA may exert the toxic effect by further attenuating the reduced function of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
        , for example, by suppressing the expression or localization of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">Vrg4</ext-link>
         to the Golgi. Alternatively, the impaired glycosylation may cause sensitivity to VPA. In eukaryotes, glycosylation serves a crucial role in cell physiology and impacts numerous processes, including quality control during protein folding, protein trafficking, cell recognition, developmental signaling, and immune system function 
        <xref ref-type="bibr" rid="R20">(Reily et al. 2019)</xref>
        . Further studies will need to clarify the cell physiology that affects VPA sensitivity.
      </p>
    </sec>
    <sec>
      <title>Methods</title>
      <p>
        <bold>Yeast strains and medium.</bold>
        <italic>S. pombe</italic>
         strains used in this study are listed in the Reagents section. Strains were grown in Edinburgh minimal medium (EMM) as described previously 
        <xref ref-type="bibr" rid="R23">(Sabatinos and Forsburg 2010)</xref>
        . Unless otherwise stated, media were supplemented with 5 µM thiamine. Valproic acid was purchased from Sigma (St. Louis). Spot assays were performed three times with reproducible results.
      </p>
      <p>
        <bold>
          Isolation of the 
          <italic>vas21 </italic>
          mutant and identification of the mutation site.
        </bold>
        The 
        <italic>vas21 </italic>
        mutant was identified through a screening of cells that had been mutagenized with nitrosoguanidine as previously described 
        <xref ref-type="bibr" rid="R29">(Zhang et al. 2000)</xref>
        . 
        <italic>
          <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
          <sup>+</sup>
        </italic>
         gene was cloned by complementation test using an 
        <italic>S. pombe </italic>
        genomic DNA library constructed by the method described previously 
        <xref ref-type="bibr" rid="R2">(Beach et al. 1982)</xref>
        . 
        <italic>vrg4-21</italic>
         allele was amplified by PCR with oligonucleotides (CGGGATCCATGGATAATCATATGCTAAACC and GACTTTGACAGACTATCGCG) and the PCR products were analyzed by Sanger DNA sequencing by Macrogen Japan Corp. (Tokyo, Japan).
      </p>
      <p>
        <bold>Acid phosphatase staining</bold>
        Acid phosphatase from ﬁssion yeast was separated by a non-denaturing polyacrylamide gel electrophoresis (PAGE) and stained as described in 
        <xref ref-type="bibr" rid="R25">(Schweingruber et al. 1986)</xref>
        , with some modiﬁcations. Briefly, cells were grown in 20 ml of EMM medium to mid-log phase and then replaced with phosphate-free EMM followed by 7 h incubation at 27˚C to induce the production of acid phosphatase. Cells were then collected by centrifugation, washed once with 62.5 mM Tris-HCl (pH 6.8), and suspended in ice-cold lysis buffer (62.5 mM Tris-HCl, 1 mM EDTA, 2 mM phenylmethylsulfonyl ﬂuoride, 0.1 mM dithiothreitol and 10% glycerol, pH 6.8) and homogenized with glass beads using Multi-beads Shocker (Yasui Kikai, Osaka, Japan). The lysates were cleared by centrifugation at 15,000 rpm for 10 min. The supernatant was mixed with a one-third volume of 0.01% bromophenol blue, 15% glycerol and 62.5 mm Tris-HCl (pH 6.8). Samples were separated by native-PAGE (6% polyacrylamide) and the gels were immersed in 100 mM sodium acetate (pH 4.0) for 15 min and then stained with Fast Blue B salt and 1-naphthyl phosphate as described in 
        <xref ref-type="bibr" rid="R13">(Miyatake et al. 2007)</xref>
        . The mobility assays for acid phosphatase were performed four times with reproducible results.
      </p>
    </sec>
    <sec>
      <title>Reagents</title>
      <table-wrap>
        <table>
          <tbody>
            <tr>
              <td>
                <p>
                  <bold>Strains</bold>
                </p>
              </td>
              <td>
                <p>
                  <bold>Genotype</bold>
                </p>
              </td>
              <td>
                <p>
                  <bold>Reference</bold>
                </p>
              </td>
            </tr>
            <tr>
              <td>
                <p>HM123</p>
              </td>
              <td>
                <p>
                  <italic>
                    h
                    <sup>-</sup>
                     leu1-32
                  </italic>
                </p>
              </td>
              <td>
                <p>Lab stock</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>KP1331</p>
              </td>
              <td>
                <p>
                  <italic>
                    h
                    <sup>-</sup>
                     leu1-32 vrg4-21
                  </italic>
                </p>
              </td>
              <td>
                <p>Lab stock</p>
              </td>
            </tr>
            <tr>
              <td/>
              <td/>
              <td/>
            </tr>
            <tr>
              <td>
                <p>
                  <bold>Plasmids</bold>
                </p>
              </td>
              <td>
                <p>
                  <bold>Description</bold>
                </p>
              </td>
              <td>
                <p>
                  <bold>Reference</bold>
                </p>
              </td>
            </tr>
            <tr>
              <td>
                <p>pKB2728</p>
              </td>
              <td>
                <p>pREP1-GFP</p>
              </td>
              <td>
                <p>Lab stock</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>pKB4886</p>
              </td>
              <td>
                <p>
                  pREP1-GFP-
                  <italic>
                    <ext-link ext-link-type="pombase" xlink:href="SPAC144.18">vrg4</ext-link>
                    <sup>+</sup>
                  </italic>
                </p>
              </td>
              <td>
                <p>This study</p>
              </td>
            </tr>
          </tbody>
        </table>
      </table-wrap>
    </sec>
  </body>
  <back>
    <ack>
      <sec>
        <title>Acknowledgments</title>
        <p>We thank the members of Kuno Lab, Sugiura Lab, and Fang Lab for their discussion and technical support.</p>
      </sec>
    </ack>
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