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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/archiving/1.2/JATS-archivearticle1.dtd">
<article article-type="brief-report" xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>microPublication Biology</journal-title>
      </journal-title-group>
      <issn pub-type="epub">2578-9430</issn>
      <publisher>
        <publisher-name>Caltech Library</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.17912/micropub.biology.001265</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>new finding</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>cell culture</subject>
        </subj-group>
        <subj-group subj-group-type="subject">
          <subject>phenotype data</subject>
        </subj-group>
        <subj-group subj-group-type="species">
          <subject>s. pombe</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Extracellular calcium promotes internalization and degradation of the fission yeast TRP-like calcium ion channel Pkd2</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <name>
            <surname>Koyano</surname>
            <given-names>Takayuki</given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
          <xref ref-type="corresp" rid="cor1">§</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Onishi</surname>
            <given-names>Kaori</given-names>
          </name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Matsuyama</surname>
            <given-names>Makoto</given-names>
          </name>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Fukushima</surname>
            <given-names>Masaki</given-names>
          </name>
          <xref ref-type="aff" rid="aff3">3</xref>
        </contrib>
        <contrib contrib-type="author">
          <name>
            <surname>Kume</surname>
            <given-names>Kazunori</given-names>
          </name>
          <xref ref-type="aff" rid="aff4">4</xref>
          <xref ref-type="aff" rid="aff5">5</xref>
        </contrib>
        <aff id="aff1">
          <label>1</label>
          Division of Cell Biology, Shigei Medical Research Institute, Okayama, Okayama, Japan
        </aff>
        <aff id="aff2">
          <label>2</label>
          Division of Molecular Genetics, Shigei Medical Research Institute, Okayama, Okayama, Japan
        </aff>
        <aff id="aff3">
          <label>3</label>
          Shigei Medical Research Hospital, Okayama, Okayama, Japan
        </aff>
        <aff id="aff4">
          <label>4</label>
          Graduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan
        </aff>
        <aff id="aff5">
          <label>5</label>
          Hiroshima Research Center for Healthy Aging (HiHA), Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan
        </aff>
      </contrib-group>
      <contrib-group>
        <contrib contrib-type="reviewer">
          <anonymous/>
        </contrib>
      </contrib-group>
      <author-notes>
        <corresp id="cor1">
          <label>§</label>
          Correspondence to: Takayuki Koyano (
          <email>koyano@shigei.or.jp</email>
          )
        </corresp>
        <fn fn-type="coi-statement">
          <p>The authors declare that there are no conflicts of interest present.</p>
        </fn>
      </author-notes>
      <pub-date date-type="pub" publication-format="electronic">
        <day>5</day>
        <month>8</month>
        <year>2024</year>
      </pub-date>
      <pub-date date-type="collection" publication-format="electronic">
        <year>2024</year>
      </pub-date>
      <volume>2024</volume>
      <elocation-id>10.17912/micropub.biology.001265</elocation-id>
      <history>
        <date date-type="received">
          <day>25</day>
          <month>6</month>
          <year>2024</year>
        </date>
        <date date-type="rev-recd">
          <day>3</day>
          <month>8</month>
          <year>2024</year>
        </date>
        <date date-type="accepted">
          <day>31</day>
          <month>7</month>
          <year>2024</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 by the authors</copyright-statement>
        <copyright-year>2024</copyright-year>
        <license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
          <license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <p>
          The correct localization of proteins is linked to their cellular function. The 
          <italic>Schizosaccharomyces pombe</italic>
           Pkd2 localizes to the endoplasmic reticulum and plasma membrane. Here we investigate the behavior of Pkd2 in response to calcium. Pkd2-GFP, normally enriched at the cell ends, is reduced from the plasma membrane by CaCl
          <sub>2</sub>
           addition, while cytoplasmic dots and free GFP are increased. This suggests that Pkd2 is internalized and degraded in response to extracellular CaCl
          <sub>2</sub>
          . This internalization is partially suppressed by treatment with an Arp2/3 inhibitor, CK-666. Our data provide new insights into the relationship between Pkd2 internalization and calcium response.
        </p>
      </abstract>
      <funding-group>
        <funding-statement>&lt;p&gt;This work was supported by Wesco Scientific Promotion Foundation (T.K.), Ryobi Teien Memory Foundation (T.K.), and JSPS KAKENHI Grant Number 24K01681 (K.K.).&lt;/p&gt;</funding-statement>
      </funding-group>
    </article-meta>
  </front>
  <body>
    <fig position="anchor" id="f1">
      <label>
        Figure 1. 
        <bold>
          The behavior of fission yeast Pkd2 in response to external CaCl
          <sub>2</sub>
        </bold>
      </label>
      <caption>
        <p>
          (a) Representative images of Pkd2-GFP in the absence or presence of an additional 0.2M CaCl
          <sub>2</sub>
          . The plasma membranes were marked by Cki3-tdTomato. The line plots were carried out along with the long axis of the cells. Cki3 peaks indicate the tips of the cells. Bar, 2 µm. (b) The number of Pkd2-GFP cytoplasmic dots per cell (n &gt; 100). Cells were cultured in the absence or presence of an additional 0.2M CaCl
          <sub>2</sub>
           for 2 h. Dashed lines and dotted lines in the violin plot indicate median and quartiles, respectively. (c) Western blotting analysis. Whole-cell extracts were prepared from the indicated strains in the absence or presence of an additional 0.2M CaCl
          <sub>2</sub>
           and immunoblotting was carried out with anti-GFP and anti-Cdc2 (as a control) antibodies. The positions of size markers are shown on the right. Arrow indicates the position of GFP size. (d) Representative images of Pkd2-GFP. Cells were cultured for 2 h in the absence or presence of 0.2 M CaCl
          <sub>2</sub>
           and 200 µM of CK-666. Arrows indicate the abnormal Cki3 localization patterns. Bar, 2 µm. (e) The number of Pkd2-GFP cytoplasmic dots in the indicated culture conditions (n &gt; 50). (f) The intensity of Pkd2-GFP at the cell tips (n = 50). (g) Western blotting analysis. Whole-cell extracts were prepared from the indicated culture conditions and immunoblotted with anti-GFP and anti-Cdc2 (as a control) antibodies. All p values were obtained from the two-tailed unpaired Student's t test. ****p &lt; 0.0001, ***p = 0.0002.
        </p>
      </caption>
      <graphic xlink:href="25789430-2024-micropub.biology.001265"/>
    </fig>
    <sec>
      <title>Description</title>
      <p>
        Mutations in 
        <italic>PKD2</italic>
         gene cause autosomal dominant polycystic kidney disease (ADPKD), which is one of the most frequent genetic kidney diseases 
        <xref ref-type="bibr" rid="R2">(Cornec-Le Gall et al., 2019; Mochizuki et al., 1996)</xref>
        . 
        <italic>PKD2</italic>
         encodes Polycystin-2 (
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
        ), a cation channel in the primary cilium membrane and endoplasmic reticulum (ER) of renal collecting duct cells 
        <xref ref-type="bibr" rid="R7">(Ma et al., 2017; Padhy et al., 2022)</xref>
        . 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         also has an essential role in determination of left-right symmetry in mouse embryos 
        <xref ref-type="bibr" rid="R17">(Yoshiba et al., 2012)</xref>
        . 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         preferentially localizes to the dorsal side of a cilium membrane to sense the direction of nodal flow 
        <xref ref-type="bibr" rid="R4">(Katoh et al., 2023)</xref>
        . However, little is known how these spatial localizations are regulated.
      </p>
      <p>
        Fission yeast 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         shares some similarities but does not complement human 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         (h
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
        ) 
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023; Malla et al., 2023)</xref>
        . Fission yeast 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         also localizes to both the ER and plasma membrane, like mammalian 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023)</xref>
        . The N-terminal region including a signal sequence of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         and 9 transmembrane domains are required for ER localization 
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023; Malla et al., 2023)</xref>
        . Depletion of the C-terminal region of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         enhances eisosomal localization and suppresses internalization 
        <xref ref-type="bibr" rid="R9">(Malla et al., 2023)</xref>
        . Although 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization and degradation have been reported 
        <xref ref-type="bibr" rid="R1">(Aydar &amp; Palmer, 2009; Malla et al., 2023)</xref>
        , the details are still unknown.
      </p>
      <p>
        We first checked the cellular localization by a fluorescence microscope. C-terminally GFP-tagged 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         (Pkd2-GFP) localized to the plasma membrane, marked by 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1805.05">Cki3</ext-link>
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2015)</xref>
        , and cytoplasm as a dot; however, plasma membrane localization was attenuated and the cytoplasmic dots were increased in the externally CaCl
        <sub>2</sub>
         added condition (
        <xref ref-type="fig" rid="f1">Figure 1a</xref>
        ). Line plots indicated that Pkd2-GFP signals peaked at both cell ends where 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1805.05">Cki3</ext-link>
         also peaked (
        <xref ref-type="fig" rid="f1">Figure 1a</xref>
        ). On the other hand, GFP signals were decreased from the plasma membrane and cytoplasmic dots were increased in the externally CaCl
        <sub>2 </sub>
        added condition (
        <xref ref-type="fig" rid="f1">Figure 1a, b</xref>
        ). These data indicate that 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization is induced by extracellular calcium.
      </p>
      <p>
        We have previously shown that Western blotting analysis shows different band patterns depending on the position of GFP tagging 
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023)</xref>
        . We checked whether 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         protein behaviors are affected by extracellularly added calcium, as 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         is involved in calcium influx and calcineurin-dependent signaling pathways 
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023; Ma et al., 2011; Poddar et al., 2022)</xref>
        . Consistent with previous data, N-terminally GFP-tagged 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         (GFP-
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
        ) showed a single full-length band that was slightly decreased by extra CaCl
        <sub>2</sub>
         (
        <xref ref-type="fig" rid="f1">Figure 1c</xref>
        ). On the other hand, the extract from Pkd2-GFP expressing cells showed 2 major bands, a full-length sized band (~110kDa) and a cleaved-sized band (~75kDa) by the Western blotting analysis (
        <xref ref-type="fig" rid="f1">Figure 1c</xref>
        ). In addition to 2 major bands, there was a weak band around GFP size (~28kDa) (
        <xref ref-type="fig" rid="f1">Figure 1c</xref>
        ). Interestingly, the signal of the GFP band increased with the addition of CaCl
        <sub>2</sub>
        , whereas the signals of the 2 bands, especially the cleaved band (~75kDa) decreased (
        <xref ref-type="fig" rid="f1">Figure 1c</xref>
        ). The free GFP signal was taught to be enhanced by the 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         degradation since 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         reportedly localizes to the vacuole and is degraded 
        <xref ref-type="bibr" rid="R9">(Malla et al., 2023)</xref>
        . Taken together, we propose that 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         is internalized and subsequently degraded in response to the external calcium.
      </p>
      <p>
        The previous report suggests that endocytosis is involved in 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization process 
        <xref ref-type="bibr" rid="R9">(Malla et al., 2023)</xref>
        . In fission yeast, Arp2/3 plays a critical role in clathrin-mediated endocytosis 
        <xref ref-type="bibr" rid="R3">(Galletta &amp; Cooper, 2009; Marek et al., 2020)</xref>
        . We then examined the effect of CK-666, an Arp2/3 specific inhibitor 
        <xref ref-type="bibr" rid="R14">(Nolen et al., 2009)</xref>
        , on 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization. The cytoplasmic Pkd2-GFP dots disappeared with the treatment of CK-666 (
        <xref ref-type="fig" rid="f1">Figure 1d, e</xref>
        ); however, membrane intensities at the cell tips were not fully recovered (
        <xref ref-type="fig" rid="f1">Figure 1d, f</xref>
        ). It is noted that Pkd2 and 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1805.05">Cki3</ext-link>
         showed abnormal localization patterns in the double treatment condition of CaCl
        <sub>2</sub>
         and CK-666 (
        <xref ref-type="fig" rid="f1">Figure 1d, arrows</xref>
        ). Concomitantly, the GFP band vanished from the gel by treatment with CK-666 in both the presence and absence of extra CaCl
        <sub>2</sub>
         (
        <xref ref-type="fig" rid="f1">Figure 1g</xref>
        ). We conclude that 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization and subsequent degradation in response to extracellular calcium is partially promoted by Arp2/3-dependent endocytosis. Further analysis will reveal the biological significance of 
        <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">Pkd2</ext-link>
         internalization and degradation in response to calcium.
      </p>
    </sec>
    <sec>
      <title>Methods</title>
      <p>
        <bold>Yeast method</bold>
      </p>
      <p>
        Standard media and methods for fission yeast were used 
        <xref ref-type="bibr" rid="R13">(Moreno et al., 1991)</xref>
        . Strains used in this study are listed in the Reagents section. The strains were grown in YE5S media and incubated at 27°C. For CaCl
        <sub>2</sub>
         treatment, 1 mL of 2M CaCl2 was added to 9 mL of the overnight culture (OD600: 0.3-0.6) and cultured for an additional 2 h. 20 mM CK-666 (Sigma-Aldrich, SML0006) was prepared in DMSO and stored at -20°C until use. 100 µL of 20 mM CK-666 is added to the 10 mL cell culture (final concentration: 200 µM).
      </p>
      <p>
        <bold>Microscopy</bold>
      </p>
      <p>Fluorescence microscope images were obtained by the Olympus IX83 inverted microscope system with UPLXAPO 60x objective lens (NA 1.42, immersion oil) and a DP80 digital camera. The cells were collected by the centrifuge at 5,000rpm for 1 min, and spotted onto a glass slide (Matsunami glass). The cells were observed immediately after covering with a coverslip. Deconvolved images were shown in Figures. The signal intensities were measured by using Image J (Line Plot Profile). Pkd2-GFP intensities at the cell tips were obtained from where Cki3-tdTomato intensities were peak. Images were processed by using CellSens Dimension (Evident) and affinity photo 2.</p>
      <p>
        <bold>Western blotting</bold>
      </p>
      <p>
        Whole-cell extracts were prepared based on the alkaline method 
        <xref ref-type="bibr" rid="R11">(Matsuo et al., 2006)</xref>
         and as described previously 
        <xref ref-type="bibr" rid="R5">(Koyano et al., 2023)</xref>
        . The samples were separated by 10% of SDS-PAGE gel (Bio-rad, 4561035) and transfer to a PVDF membrane. The membranes were blocked with 5 % of skim milk in TBS-tween20 (TBST) for 30 min at room temperature, subsequently incubated with Anti-GFP (Roche, 11814460001) at 4°C overnight. After washing with TBST, the membranes were incubated with anti-Mouse (Thermo Fisher Scientific, G-21040) at room temperature for 60 min. To efficiently detect the GFP signal, Can Get Signal
        <sup>TM</sup>
         immunoreaction enhancer solution (TOYOBO, NKB101) was used. Then the membranes were incubated with Western Blot Quant HRP substrate (Takara Bio, T7102). For the control, the membranes were re-incubated with anti-
        <ext-link ext-link-type="pombase" xlink:href="SPBC11B10.09">Cdc2</ext-link>
         (SantaCruz Biotechnology, SC-53217) in TBST with 0.1% of sodium azide at room temperature for 3 h. Amersham Image Quant 800 (Cytiva) was used for detection of chemiluminescence.
      </p>
    </sec>
    <sec>
      <title>Reagents</title>
      <p>The strains used in this study and their genotypes are listed below.</p>
      <table-wrap>
        <table>
          <tbody>
            <tr>
              <td>
                <p>Strain</p>
              </td>
              <td>
                <p>Genotype</p>
              </td>
              <td>
                <p>Reference</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>513</p>
              </td>
              <td>
                <p>
                  <italic>h- leu1-32 ura4-D18</italic>
                </p>
              </td>
              <td>
                <p>Lab stock</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>TK1323-1</p>
              </td>
              <td>
                <p>
                  <italic>
                    h- Δ
                    <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    ::kanMX leu1-32:P
                    <sub>
                      <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    </sub>
                    -GFP-
                    <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    <sup>+</sup>
                    -T
                    <sub>
                      <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    </sub>
                    -leu1
                    <sup>+</sup>
                  </italic>
                </p>
              </td>
              <td>
                <p>Koyano et al., 2023</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>UKK2767</p>
              </td>
              <td>
                <p>
                  <italic>
                    h- 
                    <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    <sup>+</sup>
                    :GFP:hphMX
                  </italic>
                </p>
              </td>
              <td>
                <p>This study</p>
              </td>
            </tr>
            <tr>
              <td>
                <p>TK1818-2</p>
              </td>
              <td>
                <p>
                  <italic>
                    h- 
                    <ext-link ext-link-type="pombase" xlink:href="SPAC1F7.03">pkd2</ext-link>
                    <sup>+</sup>
                    :GFP:hphMX 
                    <ext-link ext-link-type="pombase" xlink:href="SPAC1805.05">cki3</ext-link>
                    <sup>+</sup>
                    :tdTomato:kanMX leu1-32
                  </italic>
                </p>
              </td>
              <td>
                <p>This study</p>
              </td>
            </tr>
          </tbody>
        </table>
      </table-wrap>
    </sec>
  </body>
  <back>
    <ack>
      <sec>
        <title>Acknowledgments</title>
        <p>We would like to thank Dr. Takashi Toda for the strains and Dr. Tohru Okigaki for the critical reading and comments on the manuscript. We also thank Dr. Fumihiro Shigei, Chairman of the Board, Sowakai Social Medical Corporation, for his encouragement and financial support.</p>
      </sec>
    </ack>
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