µP

microPublication Biology

Cassia Bastress1ORCID logo, Michiel de Hoon2ORCID logo, Manuel Lera-Ramirez3§ORCID logo, and Jürg Bähler3ORCID logo

1Faculty of Science, McGill University, Montréal, Canada

2RIKEN Center for Integrative Medical Sciences, Yokohama, Japan

3University College London, London, United Kingdom

§Correspondence to: Manuel Lera-Ramirez (manuel.lera-ramirez@ucl.ac.uk)

Abstract

Description

Methods

Extended Data

  • Description: Document describing the principle of the algorithm with examples.. Resource Type: Text. DOI: 10.22002/qnbhp-4jc30
  • Description: Slides complementing the Algorithm Narration.. Resource Type: Image. DOI: 10.22002/vpn8n-fb612

Funding

Author Contributions

  • Cassia Bastress: Writing - original draft, Software, Conceptualization
  • Michiel de Hoon: Methodology, Writing - review & editing, Supervision
  • Manuel Lera-Ramirez: Supervision, Writing - review & editing
  • Jürg Bähler: Writing - review & editing

Reviewed By

Martin Larralde

History

  • Received: 12/2/2025
  • Revision Received: 1/30/2026
  • Accepted: 2/13/2026
  • Published Online: 2/18/2026

References

  1. doi:10.1186/s12864-016-3477-5
  2. doi:10.1093/bioinformatics/btp163
  3. doi:10.1093/nar/gkh340 
  4. 10.1101/2025.07.15.664876
  5. doi:10.1093/nar/gkf436
  6. 10.1093/bib/bbn013
  7. doi:10.1038/msb.2011.75

Copyright

© 2026 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

microPublication Biology is published by

1200 E. California Blvd. MC 1-43 Pasadena, CA 91125

The microPublication project is supported by

The National Institute of Health -- Grant #: 1U01LM012672-01

microPublication Biology:ISSN: 2578-9430