µP

microPublication Biology

Shodai Taguchi1,2,3*ORCID logo, Ryosuke Matsuzawa3,4*ORCID logo, Yasuyuki Suda2ORCID logo, Kenji Irie2, and Haruka Ozaki3,5,6§ORCID logo

1Ph.D. Program in Humanics, School of Integrative and Global Majors, University of Tsukuba, Tsukuba, Ibaraki, Japan

2Department of Molecular Cell Biology, Institute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan

3Bioinformatics Laboratory, Institute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan

4Doctoral Program in Medical Sciences, Degree Programs in Comprehensive Human Sciences, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan

5Center for Artificial Intelligence Research, University of Tsukuba, Tsukuba, Ibaraki, Japan

6Laboratory for AI Biology, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyōgo, Japan

§Correspondence to: Haruka Ozaki (haruka.ozaki@md.tsukuba.ac.jp)

* Authors have equal contribution

Abstract

Description

Methods

Reagents

Extended Data

  • Description: Supplementary Table 1: Pairwise Pearson correlation coefficients (PCCs) of 5,193 gene expression between 24 samples.. Resource Type: Dataset. DOI: 10.22002/82xv5-wk067

Acknowledgements

Funding

Author Contributions

  • Shodai Taguchi: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Writing - original draft
  • Ryosuke Matsuzawa: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing - original draft
  • Yasuyuki Suda: Resources, Writing - original draft
  • Kenji Irie: Resources, Writing - original draft
  • Haruka Ozaki: Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing - original draft

Reviewed By

Thomas Booth

History

  • Received: 3/6/2025
  • Revision Received: 5/1/2025
  • Accepted: 5/6/2025
  • Published Online: 5/13/2025

References

  1. 10.1038/s41467-022-31033-9
  2. 10.1128/AEM.00429-09
  3. 10.4061/2011/620247
  4. 10.3390/fermentation7020062
  5. 10.1093/nar/30.1.207
  6. 10.1128/mSystems.01323-20
  7. 10.1021/acssynbio.0c00240
  8. 10.1002/elsc.201400252
  9. 10.7554/eLife.77007
  10. 10.1021/jasms.1c00077
  11. 10.1038/s41467-022-31357-6
  12. 10.1038/37398
  13. 10.1039/d3dd00255a
  14. 10.3390/robotics14010002
  15. 10.1186/1471-2199-7-3
  16. 10.1093/emboj/20.3.552
  17. 10.1016/j.slast.2022.12.001
  18. 10.1186/s12864-020-07137-1
  19. 10.1038/nbt.4151

Copyright

© 2025 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

microPublication Biology is published by

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The microPublication project is supported by

The National Institute of Health -- Grant #: 1U01LM012672-01

microPublication Biology:ISSN: 2578-9430